Neuroscience: Gene therapy for hearing loss: Potential and limitations →
May 11, 2012
Regenerating sensory hair cells, which produce electrical signals in response to vibrations within the inner ear, could form the basis for treating age- or trauma-related hearing loss. One way to do this could be with gene therapy that drives new sensory hair cells to grow.
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This post was reblogged from Neuroscience.
Virtual Flight Over Asteroid Vesta
Credit: NASA, JPL-Caltech, UCLA, MPS, DLR, IDA; Animation: German Aerospace Center (DRL)
(Source: apod.nasa.gov)
This post was reblogged from NASA.
Watch a sun get destroyed by a black hole.
This is a NASA simulation of star similar to our sun, being torn apart by a black hole [represented by the blue dot] that weighs millions times more than the star itself. A very striking image, that shows the breathtaking influence of black holes on imaginably small mass found commonly through out the universe.
‘You get to watch as “some of the stellar debris falls into the black hole and some of it is ejected into space at high speeds.” The scariest bit is that by the end, there’s no more sun — an event NASA describes as “stellar homicide.”’ [x]
You can read more about the actual ‘Stellar Homocide’ on NASA’s site here.
Persiko: Our brain judges the color of an object by comparing it to surrounding colors. →
Take a look at this image, You see embedded spirals of green, pinkish-orange, and blue? Incredibly, the green and the blue spiralsare the same color.
The reason they look different colors is because our brain judges the color of an object by comparing it to surrounding colors. In this case, the stripes are not continuous as they appear at first glance. The orange stripes don’t go through the “blue” spiral, and the magenta ones don’t go through the “green” one. Here’s a zoom to make this more clear:
The orange stripes go through the “green” spiral but not the “blue” one. So without us even knowing it, our brains compare that spiral to the orange stripes, forcing it to think the spiral is green. The magenta stripes make the other part of the spiral look blue, even though they are exactly the same color.
Ten Things You Probably Didn’t Know About DNA
It may be the basis of all life on Earth, but we’re betting there’s still a lot you don’t know about deoxyribonucleic acid. Who discovered it? What makes it “right-handed”? And what does it have to do with LSD? Find out after the jump.
10. James Watson and Francis Crick did not discover DNA
Neither did Rosalind Franklin or Maurice Wilkins, for that matter. In actuality, the credit for discovering DNA goes to oneFriedrich Miescher. In 1869, the Swiss biochemist was inspecting the pus on used surgical bandages (yay, science!) when a substance he didn’t recognize passed into his microscope’s field of view. He called the substance “nuclein,” because, he noted, it was located within the nuclei of cells.9. Good Call, Miescher
Which is funny, because you can actually find a fair bit of DNA in mitochondria, as well. What’s interesting, though, is that out of all your DNA, it’s the stuff in your nuclei that play the most important role from a hereditary standpoint; remarkably, Miescher would later speculate in a letter to his uncle that this mysterious “nuclein” might actually play a role in heredity.8. It took decades to prove Miescher’s hunch was right
Miescher’s insight was years, if not decades, ahead of its time. By the turn of the 20th century, scientists had begun to strongly suspect that chromosomes — densely packed structures of DNA and protein — were involved in the transmission of traits from one generation to the next, but it wasn’t until researcher Thomas Hunt Morgan showed that molecular differences in chromosomes actually corresponded to heritable physical characteristics in fruit flies that anybody truly appreciated the fundamental role of said chromosomes in the transfer of genetic information.7. Wait… what genetic information?
What’s interesting about the phrase “genetic information” is that even as late as 1933, the year Morgan received a Nobel Prize for his groundbreaking work on chromosomes, many scientists still doubted the existence of so-called “genes” — information, presumably housed within chromosomes, that gave rise to the physical traits Morgan had observed in his experiments. At the time, Morgan wrote that there was no consensus “as to what the genes are — whether they are real or purely fictitious.”The concept of genes only really found its footing in 1944, when molecular biologistOswald Avery (pictured here) showed thatgenes were not only real, but that they were composed of DNA (and not, for example, proteins, which — also being contained in chromosomes — many scientists had assumed comprised our true “genetic” blueprint).
6. LSD May have played a role in the discovery of DNA’s structure
Just nine years after Avery’s discovery, James Watson and Francis Crick published an article inNature describing the double helical structure of DNA — a structure which, according to some accounts, Crick claims to have perceived while high on LSD.5. Why is it Watson and Crick and not Crick and Watson?
Joe Hanson actually posed this excellent question last week on It’s Okay to be Smart:How did they decide whose name would come first on their paper? That’s where we get the comfortable meter of their paired and classic name pairing from. I mean, did they flip a coin? It was a fairly even collaboration, and I don’t know why their names weren’t on the paper in alphabetical order.
I mean, just think of that. What if it had been Crick & Watson? A huge part of the biological lexicon would be changed:
“Well Steve, you can clearly see the canonical Crick & Watson base-pairing there in the hairpin.”
It turns out they did just flip a coin, though to hear James Watson tell it, it sounds like he felt he deserved to be first author, anyway.
4. DNA is Right-Handed
When you see DNA depicted as a double helix, you can clearly see that its structure is twisted. That twist makes DNA a “chiral” molecule, meaning it is asymmetric in such a way that a DNA molecule and its mirror image are not superimposable. Examples of chirality are everywhere. Take your hands, for example. For all intents and purposes, your left hand and right hand are mirror images of one another, but no matter how you twist or position either hand, you’ll find that it is impossible to orient the two of them in exactly the same way. Chirality is the reason you can’t shake a person’s right hand with your left, or wear your left shoe on your right foot.Chiral molecules are said to possess “handedness,” and in DNA, that handedness is characterized by the direction of its twisting strands. DNA’s right-handedness can be identified by a simple trick involving your hands. Take your right hand and, with your thumb pointing upward, imagine grasping the spiral pictured here (in this diagram there is only one helix… in DNA there are two, but this rule still applies). Now imagine your hand twisting around the outside of the spiral, tracing its grooves in the direction that your fingertips are pointing. Your hand should rotate upward along the helix. If you try this trick with your left hand, again grasping the helix with your thumb pointing up, you’ll notice that following the rotation of the helix in the direction your fingertips are pointing will cause your hand to move downward.
That means that if you’re reading an article online or in a magazine and it features a picture of aleft-handed double helix, that picture is wrong, wrong, wrong.
3. Except when it isn’t
Yes, most DNA is right-handed. The DNA molecule that Watson and Crick described, for example, was right-handed. But DNA can actually exist in a variety of biologically active helical conformations. The one most people are familiar with is called B-DNA (depicted at center in the image shown here). On the far left is another conformation of DNA, (called A-DNA) that is also right-handed, but more tightly wound than B-DNA. On the far right, however, is a left-handed conformation, known (awesomely) as Z-DNA. So before you go on a pedantic rampage about left- and right-handed DNA, make sure you’re not getting all bent out of shape over some Z-DNA (or a plot point in the upcoming Spider-Man movie… watch for the left-handed helices around 1:30).2. DNA can exist in a variety of bizarre and unfamiliar forms
You want a triple helix? You got it. A transient, four-stranded super-molecule (that just happens to be the lynchpin step in the process of genetic recombination)?Coming right up. How about a smiley face, a map of the Americas, or a nanodrug-carrying box, complete with lock and key? Yeah, we’ve got those, too. For years, DNA has been growing in popularity as a nano-scale building material for applications in everything from medicine to technology. And we’ve only just begun to appreciate what these DNA nanomachines are capable of. [DNA tetrahedron via]1. We can make synthetic DNA
Strands of DNA and RNA are formed by stringing together long chains of molecules called nucleotides. A nucleotide is made up of three chemical components: a phosphate (labeled here in red), a five-carbon sugar group (labeled here in yellow, this can be either a deoxyribose sugar - which gives us the “D” in DNA - or a ribose sugar - hence the “R” in RNA), and one of five standard bases (adenine, guanine, cytosine, thymine or uracil, labeled in blue).By swapping out artificial molecules in place of any of these chemical components, researchers can actually make synthetic DNA. One of the most commonly created forms of synthetic DNA is XNA, which swaps out the sugar group for any number of artificially produced molecules. Just last month, researchers succeeded in creating a genetic system that allowed this XNA to replicate and evolve. And to top it all off, this “alien” XNA is actually stronger than the real thing.
This post was reblogged from Contemplating Madness.
Quantum Entanglement Can Reach Into the Past
by Clara Moskowitz
Spooky quantum entanglement just got spookier.
Entanglement is a weird statewhere two particles remain intimately connected, even when separated over vast distances, like two die that must always show the same numbers when rolled. For the first time, scientists have entangled particles after they’ve been measured and may no longer even exist.
If that sounds baffling, even the researchers agree it’s a bit “radical,” in a paper reporting the experiment published online April 22 in the journal Nature Physics.
“Whether these two particles are entangled or separable has been decided after they have been measured,” write the researchers, led by Xiao-song Ma of the Institute for Quantum Optics and Quantum Information at the University of Vienna.
Essentially, the scientists showed that future actions may influence past events, at least when it comes to the messy, mind-bending world of quantum physics…
(read more: Live Science) (image: Jon Heras, Equinox Graphics)
This post was reblogged from Shychemist.
Consciousness: The Black Hole of Neuroscience
“By the word ‘thought’ (‘pensée’) I understand all that of which we are conscious as operating in us.” –Renee Descartes
The simplest description of a black hole is a region of space-time from which no light is reflected and nothing escapes. The simplest description of consciousness is a mind that absorbs many things and attends to a few of them. Neither of these concepts can be captured quantitatively. Together they suggest the appealing possibility that endlessness surrounds us and infinity is within.
But our inability to grasp the immaterial means we’re stuck making inferences, free-associating, if we want any insight into the unknown. Which is why we talk obscurely and metaphorically about “pinning down” perception and “hunting for dark matter” (possibly a sort of primordial black hole). The existence of black holes was first hypothesized a decade after Einstein laid the theoretical groundwork for them in the theory of relativity, and the phrase “black hole” was not coined until 1968.
This post was reblogged from The New Enlightenment Age.
Supersymmetry — What Is It?
Incorporating supersymmetry into the Standard Model involves doubling the number of particles since none of the particles in the Standard Model can be superpartners of each other. With the addition of new particles, many new interactions become possible.
If the world were exactly supersymmetric, every particle known would have superpartners with the same interactions and the same mass. But fermions have boson superpartners, and vice versa. One other addition: extra Higgs particles are necessary compared with the Standard Model: 5 instead of 1.
This post was reblogged from hadron94.
Eureka! When a Blow to the Head Creates a Sudden Genius →
Could a brain injury unlock an unknown talent? A look at the phenomenon of the “acquired savant”:
There’s Orlando Serrell, who was struck in the head with a baseball as a 10-year-old and found he could remember the weather for each day following his accident. There’s Derek Amato, who woke up after hitting his head at the bottom of a pool and became a master pianist at 40, despite lacking any sort of musical training. There’s Alonzo Clemens, whose verbal and cognitive abilities stopped developing at the age of three due to a head injury but who can assemble incredibly detailed sculptures of animals in a matter of minutes. […]
It wasn’t until recently that scientists began figuring out what actually causes savant syndrome. In 2003, Bruce Miller, a professor of neurology at the University of California-San Francisco, discovered that some patients with a degenerative brain disease gained incredible artistic abilities as their condition worsened. The disease is called frontotemporal dementia (FTD), and it primarily affects the front-left portions of the brain.
FTD’s limited pattern of degeneration is a crucial detail; patients who suffer from Alzheimer’s, for example — a disease that affects the entire brain — don’t generally show savant-like abilities. Why might savant syndrome be linked to a very specific kind of brain damage? One theory has it that since FTD leaves the rest of the brain alone, the unaffected regions step in to compensate for the loss of tissue, leading to what Treffert calls “the three Rs”: recruitment, rewiring, and release.
“What happens is that there is injury,” said Treffert. “There is then recruitment of still-intact cortical tissue. There is rewiring [of brain signals] through that intact tissue, and then there is the release of dormant potential within that brain area.” In other words, savants may be unlocking parts of the brain the rest of us simply don’t have access to.
Or do we?
It strains belief, but completely ordinary people are in fact capable of gaining savant-like skills for short periods of time. Thanks to a piece of equipment called the Medtronic Mag Pro, one researcher has managed to temporarily replicate the kind of brain “damage” seen among FTD patients in healthy humans:
A series of electromagnetic pulses were being directed into my frontal lobes, but I felt nothing. Snyder instructed me to draw something. ”What would you like to draw?” he said merrily. ”A cat? You like drawing cats? Cats it is.”
[…]
Two minutes after I started the first drawing, I was instructed to try again. After another two minutes, I tried a third cat, and then in due course a fourth. Then the experiment was over, and the electrodes were removed. I looked down at my work. The first felines were boxy and stiffly unconvincing. But after I had been subjected to about 10 minutes of transcranial magnetic stimulation, their tails had grown more vibrant, more nervous; their faces were personable and convincing. They were even beginning to wear clever expressions.
In fairness, a few drawings don’t prove very much. But Allan Snyder — whom, Treffert confirms, has worked with Bruce Miller, the FTD scholar, before — is developing new, more objective ways of recording the changes the Medtronic causes in his subjects.
“He calls it the ‘thinking cap,’ ” Treffert joked.
The prospect of willfully inducing creativity conjures images of an augmented future, one where people carry around portable brain machines and give themselves a zap when circumstances demand an extra burst of intelligence. Maybe some people will choose to be permanently buzzed, at the cost of some verbal ability.
It sounds like science fiction. But the reality may be even more outlandish. Now that scientists understand how savant syndrome occurs, new research is turning to the underlying origins of the special abilities themselves. Most of it remains a mystery — a loose collection of questions more than anything resembling answers. For example, how is it that somebody like Derek Amato, who’d never demonstrated any musical talent before hitting his head at the bottom of a pool, could suddenly handle jazz and classical pieces of astounding complexity without training? How is it that someone can suffer a stroke and wake up later only to discover that their English is tinged with a foreign accent?
Treffert thinks this could be the result of something called genetic memory.
“Some savants are very disabled,” said Treffert, “yet they know the rules of math, they know the rules of music, they know the rules of art. But they’ve never been taught that. Well, how can that get there? The only way it can get there is genetically.”
If Treffert’s hypothesis is true, it potentially upends a lot of what we know about genetics — not disproving it, necessarily, but vastly expanding the boundaries of what we think our DNA to be capable of. Could genes be more than a way to pass on physical traits? Could they, in fact, also be used to transmit knowledge from one generation to another? If so, what kind?
This post was reblogged from Neurotic Thought.
Lapidarium notes: The Difference Between Online Knowledge and Truly Open Knowledge. In In the era of the Internet facts are not bricks but networks. →
The Difference Between Online Knowledge and Truly Open Knowledge. In the era of the Internet facts are not bricks but networks
“The digitization of 21st-century media, Weinberger argues, leads not to the creation of a “global village” but rather to a new understanding of whatknowledge is, to a change in the basic epistemology governing the universe. And this McLuhanesque transformation, in turn, reveals the general truth of theHeideggarian vision. Knowledge qua knowledge, Weinberger claims, is increasingly enmeshed in webs of discourse: culture-dependent and theory-free.
The causal force lying behind this massive sea change is, of course, the internet. Google search results — “9,560,000 results for ‘Heidegger’ in .71 seconds”) — taunt you with the realization that there are still another 950,000-odd pages of results to get through before you reach the end. The existence of hyperlinks is enough to convince even the most stubborn positivist that there is always another side to the story. And on the web, fringe believers can always find each other and marinate in their own illusions. The “web world” is too big to ever know. There is always another link. In the era of the Internet, Weinberger argues, facts are not bricks. They are networks. (…)
The most important aspect of Heidegger’s thought for our purposes is his understanding that human beings (or rather “Dasein,” “being-in-the-world”) are always thrown into a particular context, existing within already existing language structures and pre-determined meanings. In other words, the world is like the web, and we, Dasein, live inside the links. (…)
If our starting point is that all knowledge is networked, and always has been, then we are in a far better point to start talking about what makes today’s epistemological infastructure different from the infrastrucure in 1983. But we are also in a position to ask: if all knowledge was networked knowledge, even in 1983, than how did we not behave as if it was so? How did humanity carry on? Why did civilization not collapse into a morass of post-modern chaos? Weinberger’s answer is, once again, McLuhanesque. It was the medium in which knowledge was contained that created the difference. Stable borders around knowledge were built by books.
I would posit a different answer: if knowledge has always been networked knowledge, than facts have never had stable containers. Most of the time, though, we more or less act as if they do. Within philosophical subfield known as Actor-Network Theory (ANT) this “acting-as-if-stability-existed” is referred to as “black boxing.” One of the black boxes around knowledge might very well be the book. But black boxes can also include algorithms, census bureaus, libraries, laboratories, and news rooms. Black boxes emerge out of actually-existing knowledge networks, stabilize for a time, and unravel, and our goal as thinkers and scholars ought to be understanding how these nodes emerge and disappear. In other words, understanding changes to knowledge in this way leaves us far more sensitive to the operations of power than does the notoriously power-free perspective of Marshall McLuhan. (…)
Why don’t I care that the Google results page goes on towards infinity? If we avoid Marshall McLuhan’s easy answers to these complex questions, and retain the core of Heidegger’s brilliant insights while also adding a hefty dose of ontology to his largely immaterial philosophy, we might begin to understand the real operations of digital knowledge/power in a networked age.
Weinberger, however, does not care about power, and more or less admits this himself in a brilliant essay 2008 on the distinction between digital realists, utopians, and dystopians. Digital utopians, a group in which he includes himself, “point to the ways in which the Web has changed some of the basic assumptions about how we live together, removing old obstacles and enabling shiny new possibilities.” The realists, on the other hand, are rather dull: They argue that “the Web hasn’t had nearly as much effect as the utopians and dystopians proclaim. The Web carries with it certain possibilities and limitations, but (the realists say) not many more than other major communications medium.” Politically speaking, digital utopianism tantalizes us with the promise of what might be, and pushes us to do better. The political problem with the realist position, Weinberger argues, is that it “is … [a] decision that leans toward supporting the status quo because what-is is more knowable than what might be.”
The realist position, however, is not necessarily a position of quietude. Done well, digital realism can sensitize us to the fact that all networked knowledge systems eventually become brick walls, that these brick walls are maintained through technological, political, cultural, economic, and organizational forms of power. Our job, as thinkers and teachers, is not to stand back and claim that the all bricks have crumbled. Rather, our job is to understand how the wall gets built, and how we might try to build it differently.”
— C.W. Anderson, Ph.D, an assistant professor in the Department of Media Culture at the College of Staten Island (CUNY), researcher at the Columbia University Graduate School of Journalism, The Difference Between Online Knowledge and Truly Open Knowledge, The Atlantic, Feb 3, 2012.
See also:
☞ David Weinberger, To Know, but Not Understand: David Weinberger on Science and Big Data, The Atlantic, Jan 3, 2012
☞ Rebecca J. Rosen, What the Internet Means for How We Think About the World, The Atlantic, Jan 5 2012.
☞ When science becomes civic: Connecting Engaged Universities and Learning Communities, University of California, Davis, September 11 - 12, 2001
☞ The Filter Bubble: Eli Pariser on What the Internet Is Hiding From You
☞ A story about the Semantic Web (Web 3.0) (video)
☞ Vannevar Bush on the new relationship between thinking man and the sum of our knowledge (1945)
This post was reblogged from Lapidarium notes.




